PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G125500.1.p
Common NameGLYMA_15G125500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 707aa    MW: 81703.1 Da    PI: 5.6393
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G125500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.64.3e-2398182190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          ++Yn+YAk++GF +r+++s ++++++e   + ++C++eg++++++ +     ++r+etrtgC a++++++ ++++w+v++++l+HnH++ 
  Glyma.15G125500.1.p  98 NYYNTYAKDIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEAN-----SHRKETRTGCLAMIRLRLVDSNRWRVDEVKLDHNHSFD 182
                          69****************************************99888.....999********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2098182IPR004330FAR1 DNA binding domain
PfamPF105511.1E-29302395IPR018289MULE transposase domain
PROSITE profilePS509669.631588624IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011599626IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MTDDAMCSPN DKDLSLSPNL DITIDDGSPN NEQLLEVEDE GNELENECGQ LFEIDGSEPE  60
NGRDETTIVD SHSGESQGKD CPPPVVRMEF DTYDDAYNYY NTYAKDIGFA IRVKSSWTKR  120
NSKEKRGAVL CCNCEGFKTT KEANSHRKET RTGCLAMIRL RLVDSNRWRV DEVKLDHNHS  180
FDPERAQNSK SHKRMDSRAK RKVEPTLDVE VRTIKLYRMP VVDASGYGSS NSTEGGTSNI  240
SCSRRLKLKK GDPELISNYF CRIQLMNPNF FYVMDLNDDG QLRNVFWIDS RSRAAYSYFG  300
DVVAFDSTCL SNNYEIPLVA FVGVNHHGKS VLLGCGLLAD ETFETYIWLF RAWLTCMTGR  360
PPQTIITNQC KAMQSAIAEV FPRAHHRICL SQIMQSILGC FVQFQEYEAF QMALTKVIYD  420
SKTVDEFERA WDDLTQHFGI RNHEKLQTLH EEREHWAPVY SKDTFFAGIS DYEKGESVIP  480
FFKGHVHQQT SLKEFFEIYE LVQQKKHKTE VLDDFESRDL SSLLKTRCYY ELQLSKLYTN  540
AVFRKFQDEV VMMSSCFSIT QTQTSGSIVT YMVKEREGEE PARDARNFEV MYDNAGAEVR  600
CICSCFNFKG YLCRHALYIL NYNCVEEIPC QYILSRWRRD FKRLYVPHLS ADNVDISNPV  660
QCFDHLYKRA MQVVEEGMIS QDHYMLSWQT FKESLNKIRL VADKIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.619430.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623064.10.0PREDICTED: uncharacterized protein LOC100796448
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A0B2Q2Z50.0A0A0B2Q2Z5_GLYSO; Protein FAR1-RELATED SEQUENCE 8
TrEMBLI1MFY40.0I1MFY4_SOYBN; Uncharacterized protein
STRINGGLYMA15G13160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8